G-DIRT

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Duplicate Identification and Removal Parameters
Type of Genotypic Difference :
Genotypic Difference Threshold : % (Default : TGD: 1%; HZD= 0.1%)
Remove monomorhic SNPs :
Genarate Cluster :
     
Data Processing Parameters
Parameters
Threshold
Minor Allele Frequency : (Default: 0.05; No use: 0)
Missing data (Marker) : (Default: 0.05; No use: 1)
Missing data (Genotype) : (Default: 0.1; No use: 1)
Linkage Disequilibrium Prunning : (Default: 0.75; No use: 1)
Hardy Weinberg's Equilibrium (p-value) : (Default: 0.05; No use: 0)
Marker Heterozygosity : (Default: 0.1; No use: 1)
     
 
Cite Us: Sahu TK, Singh AK, Mittal S, Jha SK, Kumar S, Jacob SR and Singh K (2022) G-DIRT: a web server for identification and removal of duplicate germplasms based on identity-by-state analysis using SNP genotyping data. Briefings in Bioinformatics,Volume 23(5): bbac348, https://doi.org/10.1093/bib/bbac348

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Developed at ICAR-National Bureau of Plant Genetic Resources, New Delhi-110012